BC 1990 - breast cancer - data structure and
protocols
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BC
1990 data preparation: brief written protocol
Strict confidentiality of trial results is
observed. Information is held in the Clinical Trial Service Unit computers
in a form which can be accessed only by known individuals.
All patient records are converted into
'pink form' (1990) format (described below) if not already supplied in
it. Results received as tables are converted into sets of synthetic records.
The following routine checks (where appropriate) are performed on every
compilation:
-
Duplicate patient entries
-
Patient identifier missing
-
Randomisation date missing
-
Treatment allocation missing
-
Randomisation age missing
-
Menopausal status missing
-
Surgery type missing
-
Axillary status missing
-
Oestrogen receptor status missing
-
Progesterone receptor status missing
-
Contralateral breast cancer date missing
-
Recurrence date missing
-
Distant recurrence date missing
-
Survival status missing
-
Death date missing
-
Randomisation date wrong, before 1945 or out
of range
-
Contralateral breast cancer date wrong or
out of range
-
Recurrence date wrong or out of range
-
Distant recurrence date wrong or out of range
-
Last follow-up or death date wrong or out
of range
-
Treatment allocation code unknown
-
Randomisation age not in range 20-89
-
Menopausal status code unknown
-
Surgery code unknown
-
Axillary status code unknown
-
Oestrogen receptor status code unknown
-
Progesterone receptor status code unknown
-
Survival status code unknown
-
Contralateral breast cancer flag error
-
Recurrence flag error
-
Distant recurrence flag error
-
Cause of death given when alive
The total numbers of patients and the distributions
of randomisation age, menopausal status, axillary nodal status, oestrogen
receptor status and progesterone receptor status are checked for any significant
imbalance between treatment groups. These five distributions are compared
as follows. Patients are grouped into three categories according to randomisation
age (below 50 years; 50 - 69 years or unknown; 70 years or above) and a
chi-squared
test is applied to the population of the three categories found in each
treatment group. Similarly, three categories are formed for menopausal
status (pre- or perimenopausal; unknown; postmenopausal), for axillary
nodal status (negative; unknown; positive), for oestrogen receptor status
(poor; unknown; positive) and for progesterone receptor status (poor; unknown;
positive) and these are tested in the same way as the categories formed
for randomisation ages.
If an event such as the recurrence of disease
is reported at a date later than the quoted last follow-up date, the last
follow-up date is automatically changed to the later date. The completeness
of follow-up is then calculated for the end of each calendar year. The
distributions of randomisation dates, randomisation ages and time elapsed
since last follow-up are checked for any significant imbalance between
treatment groups in two ways as follows. Firstly, a t-test is applied
to the difference between the mean value of each distribution for patients
in each group with the corresponding mean for patients in the remainder.
Secondly, an F-ratio is calculated for each distribution by comparing
the variance between the groups with the variance within the groups. The
distribution of time elapsed since last follow-up is also checked in these
two ways for any significant imbalance between those patients with and
those patients without a recorded recurrence of disease. Finally, the distribution
of time elapsed since last follow-up is checked in the same two ways for
any significant imbalance between patients in two categories of menopausal
status (pre- or perimenopausal; postmenopausal), two categories of axillary
nodal status (negative; positive), two categories of oestrogen receptor
status (poor; positive) and two categories of progesterone receptor status
(poor; positive).
Where patient serial numbers form an obvious
sequence it is checked for missing numbers.
A tabulated breakdown of variables is produced
for each trial, together (where relevant) with lists of patents in 'problematical'
categories such as those with lapsed follow-up. In some cases Kaplan-Meier
life-table curves are produced. Before trial data are finally incorporated
into the overview, the analyses described above are sent to the participating
trialist(s) for checking and approval.
Contact
Please address inquiries concerning data preparation
and checking to:
Mike Clarke, Vaughan Evans, Liz Greaves, Jon
Godwin or Richard Gray
EBCTCG Secretariat
C.T.S.U.
Radcliffe Infirmary
Oxford OX2 6HE
England
Tel. U.K.(44)-Oxford(1865)-57241; FAX: U.K.(44)-Oxford(1865)-58817
Specification
of BC 1990 'pink form' format
Item |
Description |
FORTRAN |
Columns |
Details |
Abbreviation |
0 |
Study number |
I6 |
1 - 6 |
|
Trial |
1 |
Patient number |
A6 |
8 - 13 |
|
Patient |
2 |
Randomisation date |
I6 |
15 - 20 |
DDMMYY |
Rand. Date |
3 |
Treatment group |
I1 |
22 |
|
Trt. Grp |
4 |
Randomisation age |
I2 |
24 - 25 |
years |
Age |
5 |
Menopausal status on entry |
I1 |
27 |
Value |
Description |
Abbreviation |
1 |
Pre-menopausal |
Pre |
2 |
Peri-menopausal |
Peri |
3 |
Post-menopausal |
Post |
4 |
"Post-meno. surg." - NEW |
Arti |
|
Meno |
6 |
Surgery: first mastectomy |
I2 |
28 - 29 |
Value |
Description |
Abbreviation |
1 |
Radical |
Rdcl |
2 |
Total |
Totl |
3 |
Simple |
Simp |
4 |
Partial |
Part |
5 |
None |
None |
6 |
Total Simple - NEW |
T/S |
7 |
Lumpectomy - NEW |
Lump |
8 |
Subcutaneous - NEW |
Subc |
9 |
Simple with clearance - NEW |
SC |
10 |
Patey P. minor only - NEW |
PPm |
11 |
Other - NEW |
Othe |
|
Surg |
7 |
Axillary status on entry |
I2 |
30 - 31 |
Value |
Description |
Abbreviation |
1 |
N0 (clearance) |
N0 |
2 |
N1-3 (clearance) |
N1-3 |
3 |
N4+ (clearance) |
N4+ |
4 |
N- (sample only) |
N- |
5 |
N+ (sample only) |
N+ |
6 |
N- (clinical) |
N- |
7 |
N+ (clinical) |
N+ |
8 |
N- (method unknown) - NEW |
N- |
9 |
N+ (method unknown) - NEW |
N+ |
10 |
N+ (clearance) - NEW |
N+ |
11 |
N > 1 (clearance ) - NEW |
N > 1 |
12 |
N1-3 (method unknown) - NEW |
N1-3 |
13 |
N4+ (method unknown) - NEW |
N4+ |
14 |
Benign lesion - NEW |
Benign |
15 |
N? (clinical) N0 (clearance) |
|
16 |
N? (clinical) N1-3 (clearance) |
|
17 |
N? (clinical) N4+
(clearance) |
|
18 |
N? (clinical) N0
(clearance) |
|
19 |
N- (clinical) N1-3
(clearance) |
|
20 |
N- (clinical) N4+
(clearance) |
|
21 |
N- (clinical) N0
(clearance) |
|
22 |
N- (clinical) N1-3
(clearance) |
|
23 |
N+ (clinical) N4+
(clearance) |
|
24 |
N+ (clinical) N0
(clearance) |
|
25 |
N+ (clinical) N1-3
(clearance) |
|
26 |
N+ (clinical) N4+
(clearance) |
|
|
Axilla |
8 |
Oestrogen receptor status |
I2 |
32 - 33 |
Value |
Description |
Abbreviation |
1 |
Negative |
ER- |
2 |
Marginal |
ER- |
3 |
Positive |
ER+ |
4 |
< 10 fmol/mg protein |
ER- |
5 |
10 - 19 fmol/mg protein |
ER+ |
6 |
20 - 29 fmol/mg protein |
ER+ |
7 |
30 - 49 fmol/mg protein |
ER+ |
8 |
50 - 99 fmol/mg protein |
ER+ |
9 |
100+ fmol/mg protein |
ER++ |
10 |
10 - 29 fmol/mg protein - NEW |
ER+ |
11 |
30 - 100 fmol/mg protein - NEW |
ER+ |
12 |
10 - 99 fmol/mg protein - NEW |
ER+ |
13 |
0 fmol/mg protein - NEW |
ER- |
14 |
10 - 49 fmol/mg protein - NEW |
ER+ |
|
Est. Rec., E.R. |
9 |
Progesterone receptor status |
I2 |
34 - 35 |
Value |
Description |
Abbreviation |
1 |
Negative |
PR- |
2 |
Marginal |
PR- |
3 |
Positive |
PR+ |
4 |
< 10 fmol/mg protein |
PR- |
5 |
10 - 19 fmol/mg protein |
PR+ |
6 |
20 - 29 fmol/mg protein |
PR+ |
7 |
30 - 49 fmol/mg protein |
PR+ |
8 |
50 - 99 fmol/mg protein |
PR+ |
9 |
100+ fmol/mg protein |
PR++ |
10 |
10 - 29 fmol/mg protein - NEW |
PR+ |
11 |
30 - 100 fmol/mg protein - NEW |
PR+ |
12 |
10 - 99 fmol/mg protein - NEW |
PR+ |
13 |
0 fmol/mg protein - NEW |
PR- |
14 |
10 - 49 fmol/mg protein - NEW |
PR+ |
|
Prg.Rec., P.R. |
10 |
Contralateral breast cancer |
I1 |
37 |
Value |
Description |
Abbreviation |
1 |
No |
No |
2 |
Yes |
Contra |
3 |
Ipsilateral |
Ipsi - NEW |
4 |
Both |
Both - NEW |
|
Contralat |
11 |
Date of second primary breast cancer |
I6 |
39 - 44 |
DDMMYY |
2-P. Date |
12 |
Recurrence |
I1 |
46 |
Value |
Description |
Abbreviation |
1 |
No |
No |
2 |
Yes |
Yes |
|
Rec |
13 |
Date of first recurrence |
I6 |
48 - 53 |
DDMMYY |
Rec. Date |
14 |
Distant recurrence |
I1 |
55 |
Value |
Description |
Abbreviation |
1 |
No |
No |
2 |
Yes |
Yes |
|
D-Rec. Date |
15 |
Date of first distant recurrence |
I6 |
57 - 62 |
DDMMYY |
L-Rec. Date |
16 |
State when last traced |
I2 |
63 - 64 |
Value |
Description |
Abbreviation |
1 |
Alive |
Alive |
2 |
Dead |
Dead |
3 |
Lost |
Lost |
4 |
Utterly lost - NEW |
Lost+ |
5 |
Alive?, ineligible for protocol - NEW |
A/in. |
6 |
Dead, ineligible for protocol - NEW |
D/in. |
9 |
Lost, presumed dead - NEW |
LostD |
10 |
Lost and ineligible - NEW |
L/in. |
11 |
Utterly lost and ineligible - NEW |
L+/in. |
|
State |
17 |
Date died or last traced |
I6 |
66 - 71 |
DDMMYY |
L.F.U. |
18 |
Cause of death (extra category) |
I2 |
72 - 73 |
Value |
Description |
Abbreviation |
1 |
Iatrogenic - NEW |
Iatro |
2 |
Infective |
Infec |
3 |
Lymphatic and haematopoietic - NEW |
Leuk |
4 |
Other second neoplasm - NEW |
Neop2 |
5 |
Heart - NEW |
Heart |
6 |
Thrombotic or embolic - NEW |
ThEmb |
7 |
Other vascular - NEW |
Ovasc |
8 |
Extraneous cause - NEW |
Extra |
9 |
Not 1 - 8 and not breast cancer - NEW |
NotBC |
10 |
Not breast cancer - NEW |
NotBC |
11 |
Breast cancer or its metastases - NEW |
BCMet |
12 |
Unknown cause - NEW |
Unkn. |
|
Death |
19 |
Name and comments |
A |
75 - end |
|
Name |
Missing or unknown items are left blank or
set to zero.
BC
1990 data form rubric
[There will be a link to a picture of
the 1990 BC data form here - in preparation]
GUARANTEE OF CONFIDENTIALITY OF DATA
ANY INFORMATION PROVIDED OVERLEAF TO THE
EBCTCG SECRETARIAT WILL BE HELD SECURELY AND IN STRICT CONFIDENCE.
NOTES ON FORMAT OF DATA REQUESTED OVERLEAF
Special coding conventions
Please accompany these forms by an explanatory
letter about any special coding conventions (e.g. on menopausal
status, ER or PR) you have used, plus notes on any special features of
the study(s) to which you wish to draw particular attention.
Dates that are not (or not yet) known exactly
either leave DAY blank, and give
(approximate or provisional) month and year;
or leave DAY and MONTH blank, and
just give approximate year.
BASELINE DATA
Patient identifier
Any convenient convention you wish, in
case any correspondence becomes necessary. (If reporting several trials,
please try to use a system that implicitly specifies both the trial and
the patient.)
Date randomised
Please describe ALL patients EVER randomised,
including
even lost or withdrawn patients, and ignore all non-randomised
patients.
Trt. gp. allocated
Treatment group number: 1 or 2 only, for
2-group trials, or a wider range for trials with more arms, as defined
by you at the top of the form. N.B: even if, in reality, some quite
different (or even opposite!) treatment was inadvertently given, what is
wanted is the originally-allocated treatment. (For patients erroneously
entered more than once, give only the first allocation.)
Entry age
Menop. status on entry
0 or blank = not (yet) conveniently available;
1 = pre-, 2 = peri-, 3 = post-menopausal (includes bilateral ovarian ablation
before
randomisation). Use your own definitions of menopausal status at entry.
Surgery
Type of mastectomy first attempted: 0
or blank = not (yet) conveniently available; 1 = radical; 2 = total; 3
= simple; 4 = partial; 5 = none.
Axilla status on entry
0 or blank = not (yet) conveniently available;
1, 2, 3 = axillary clearance (1 = N0, 2 = N1-3, 3 = N4+); 4, 5 =
axillary sample only (4 = N-, 5 = N+); 6, 7 = no sample (6 = clinically
N-, 7 = clinically N+).
Est. Rec. on entry
Oestrogen receptor status: 0 or blank
= not (yet) conveniently available; if exact value is not available use
1 = negative; 2 = marginal; 3 = postiive; otherwise use 4, 5, 6, 7, 8,
9 for < 10, 10-19, 20-29, 30-49, 50-99 and 100+ fmol/mg protein respectively.
Prg. Rec. on entry
Progesterone receptor status: 0 or blank
= not (yet) conveniently available; if exact value is not available use
1 = negative; 2 = marginal; 3 = postiive; otherwise use 4, 5, 6, 7, 8,
9 for < 10, 10-19, 20-29, 30-49, 50-99 and 100+ fmol/mg protein respectively.
FOLLOW-UP DATA
2nd prim?
Second primary breast cancer? 1 = none
recorded; 2 = contralateral; 3 = ipsilateral; 4 = contralateral and
ipsilateral.
Approx. date of 2nd primary
Give the best estimate you can: see note
above on approximate dates.
Recur?
Any recurrence? (N.B: excludes
2nd primary breast cancer) 1 = none recorded; 2 = some recurrence (distant
or
local).
Approx. date of 1st recur
Give the best estimate you can: see note
above on approximate dates.
Dist. recur?
Any distant recurrence? 1 = none
recorded; 2 = yes: ignore local disease and regional nodes.
Approx. date of 1st dist. recur
Give the best estimate you can: see note
above on approximate dates.
Dead/other
1 = alive when last traced; 2 = known
to be dead; 3 = lost despite extensive inquiries, but alive when last traced.
Date died/last traced
Date of death, or date last known to be
alive, as accurately as possible: see note above on approximate dates.
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[End of document, updated to 3 June 2000]